Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3179591/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  213,316,184
 Normal Paired: 183,922,241 (86.22%)
 Chimeric Paired: 26,164,944 (12.27%)
 Chimeric Ambiguous: 2,758,213 (1.29%)
 Unmapped: 470,786 (0.22%)
 Ligation Motif Present: 49,329 (0.02%)
Alignable (Normal+Chimeric Paired): 210,087,185 (98.49%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-28T18:50:34,203]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,608,257 (24.66%)
PCR Duplicates: 157,478,928 (73.82%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 53,680,069
Intra-fragment Reads: 24,942,581 (11.69% / 47.41%)
Below MAPQ Threshold: 3,320,499 (1.56% / 6.31%)
Hi-C Contacts: 24,345,177 (11.41% / 46.28%)
 Ligation Motif Present: 14,941  (0.01% / 0.03%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 29% - 25% - 24% - 21%
Inter-chromosomal: 5,096,992  (2.39% / 9.69%)
Intra-chromosomal: 19,248,185  (9.02% / 36.59%)
Short Range (<20Kb): 9,821,779  (4.60% / 18.67%)
Long Range (>20Kb): 9,426,388  (4.42% / 17.92%)